PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca18404.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 358aa    MW: 41222.2 Da    PI: 7.9606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca18404.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.23e-1475171191
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y+++++ +GFs+r  + ++      + ++r f Cs++g++  +++       +  + ++++ trt+C+a+++ k++ dg+w+v +   +HnH l+p
  Dca18404.1  75 DMYRKHSQVLGFSIRLGTIRRVaGPGSREYERYFLCSNQGTTGGNSSVrsnsdsDAIQTKNTSLTRTKCNARVRAKLQ-DGEWVVVDHIVQHNHVLTP 171
                 58******************9943444568899*******99877666666666666777999***************.***************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1176171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIVDQTVVSI GNEIEVEDRI PDETFVSIED EIEVEDEDPN SEKSPNNEVT TTEYDFDISG  60
SLVGQSDKSW LVLYDMYRKH SQVLGFSIRL GTIRRVAGPG SREYERYFLC SNQGTTGGNS  120
SVRSNSDSDA IQTKNTSLTR TKCNARVRAK LQDGEWVVVD HIVQHNHVLT PHQWQHHHRS  180
ERRITSDETD IIKVMTQAKI PPSIQYRYLS VSSGGTEFVG HIKKDHYNFV HRLKRRGVEG  240
GDASTLINML SKRQADDPGF YFKVMFDEES RLCRLFWRDS MMKEDYLLYH DVVIFDTTYR  300
TNKYNLICGA FVGINNHWST TKGRGQRKKV QFKKTKRKIG TTSTCTENAP YTPNPRLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695927.13e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-29FAR1-related sequence 5